• 文献标题:   Complex Thermodynamic Behavior of Single-Stranded Nucleic Acid Adsorption to Graphene Surfaces
  • 文献类型:   Article
  • 作  者:   RANGANATHAN SV, HALVORSEN K, MYERS CA, ROBERTSON NM, YIGIT MV, CHEN AA
  • 作者关键词:  
  • 出版物名称:   LANGMUIR
  • ISSN:   0743-7463
  • 通讯作者地址:   SUNY Albany
  • 被引频次:   19
  • DOI:   10.1021/acs.langmuir.6b00456
  • 出版年:   2016

▎ 摘  要

In just over a decade since its discovery, research on graphene has exploded due to a number of potential applications in electronics, materials, and medicine. In its water-soluble form of graphene oxide, the material has shown promise as a biosensor due to its preferential absorption of single-stranded polynucleotides and fluorescence quenching properties. The rational design of these biosensors, however, requires an improved understanding of the binding thermodynamics and ultimately a predictive model of sequence-specific binding. Toward these goals, here we directly measured the binding of nucleosides and oligonucleotides to graphene oxide nanoparticles using isothermal titration calorimetry and used the results to develop molecular models of graphene nucleic acid interactions. We found individual nucleosides binding K-D values lie in the submillimolar range with binding order of rG < rA < rC < dT < rU, while Smer and LSmer oligonucleotides had markedly higher binding affinities in the range of micromolar and submicromolar K-D values, respectively. The molecular models developed here are calibrated to quantitatively reproduce the above-mentioned experimental results. For oligonucleotides, our model predicts complex binding features such as double-stacked bases and a decrease in the fraction of graphene stacked bases with increasing oligonucleotide length until plateauing beyond similar to 10-15 nucleotides. These experimental and computational results set the platform for informed design of graphene-based biosensors, further increasing their potential and application.