• 文献标题:   Free-Energy Simulations of Hydrogen Bonding versus Stacking of Nucleobases on a Graphene Surface
  • 文献类型:   Article
  • 作  者:   SPIWOK V, HOBZA P, REZAC J
  • 作者关键词:  
  • 出版物名称:   JOURNAL OF PHYSICAL CHEMISTRY C
  • ISSN:   1932-7447
  • 通讯作者地址:   Acad Sci Czech Republic
  • 被引频次:   19
  • DOI:   10.1021/jp202491J
  • 出版年:   2011

▎ 摘  要

It has been demonstrated by molecular modeling and experiments that free nucleic acid bases form hydrogen-bonded complexes in vacuum but prefer pi-pi stacking in partially and fully solvated systems. Here we show using molecular dynamics simulations and metadynamics that the addition of a surface (in this case a nanographene monolayer) reverts the situation from stacking back to hydrogen bonding. Watson-Crick as well as several non-Watson-Crick base pairs lying on a graphene surface are significantly more stable in a water environment than a pi-pi-pi-stacked graphene-base-base assembly. It illustrates that the thermodynamics of nucleobase interactions results from a fine balance among hydrogen bonding, stacking, and solvation, and that these effects must be considered in molecular design.