• 文献标题:   Unexpected sequence adsorption features of polynucleotide ssDNA on graphene oxide
  • 文献类型:   Article
  • 作  者:   MA HS, XU Z, FANG HP, LEI XL
  • 作者关键词:  
  • 出版物名称:   PHYSICAL CHEMISTRY CHEMICAL PHYSICS
  • ISSN:   1463-9076 EI 1463-9084
  • 通讯作者地址:   East China Univ Sci Technol
  • 被引频次:   1
  • DOI:   10.1039/d0cp01066a
  • 出版年:   2020

▎ 摘  要

The sequence features of single-stranded DNA (ssDNA) adsorbed on a graphene oxide (GO) surface are important for applications of the DNA/GO functional structure in biosensors, biomedicine, and materials science. In this study, molecular dynamics (MD) simulations were used to examine the adsorption of polynucleotide ssDNAs (A(12), C-12, G(12), and T-12) and single nucleotides (A, C, G, and T) on the GO surface. For the latter case, the nucleotide-GO interaction energy followed the trend G > A > C > T, even though it was influenced by specific adsorption sites. In the case of polynucleotides, unexpectedly polythymidine (T-12) had the strongest interaction with the GO surface. The angle distributions of the adsorbed nucleobases indicated that T-12 was more likely to form a quasi-parallel structure with GO compared to A(12), C-12, or G(12). This was attributed to the weakest pi-stacking interactions of thymine. Weaker intra-molecular base-stacking interactions made it easier to break the structures of pyrimidine bases relative to those of purine bases. Weaker inter-molecular base-stacking interactions between T-12 and the GO surface enabled T-12 to adjust its structure easily to a more stable one by slipping on the surface. This result provides a new understanding of polynucleotide ssDNA adsorption on GO surfaces, which will help in the design of functional DNA/GO structure-based platforms.