• 文献标题:   A graphene oxide platform for the assay of DNA 3 '-phosphatases and their inhibitors based on hairpin primer and polymerase elongation
  • 文献类型:   Article
  • 作  者:   ZHU WP, ZHAO ZW, LI Z, JIANG JH, SHEN GL, YU RQ
  • 作者关键词:  
  • 出版物名称:   JOURNAL OF MATERIALS CHEMISTRY B
  • ISSN:   2050-750X EI 2050-7518
  • 通讯作者地址:   Hunan Univ
  • 被引频次:   25
  • DOI:   10.1039/c2tb00109h
  • 出版年:   2013

▎ 摘  要

We have developed a label-free, simple and highly sensitive hairpin fluorescent biosensor for the assay of DNA 3'-phosphatases and their inhibitors utilizing a graphene oxide (GO) platform. In this assay, we designed a hairpin primer (HP) with a 3'-phosphoryl end that served as the substrate for DNA 3'-phosphatases. Once the phosphorylated HP was hydrolyzed by DNA 3'-phosphatases, the resulting HP with a 3'-hydroxyl end was immediately elongated to form a long double-strand product by Klenow fragment polymerase (KF polymerase). With SYBR green I (SG) selective staining of the double-helix DNA, a very high fluorescence enhancement was achieved. Furthermore, GO was introduced to quench the fluorescence of the HP without polymerase elongation, thereby further increasing the signal-to-background ratio. The proposed method is simple and convenient, yet still exhibits high sensitivity and selectivity. This method has been successfully applied to detecting the activity of two typical 3'-phosphatases, T4 polynucleotide kinase phosphatase (PNKP) and shrimp alkaline phosphatase (SAP). The effect of their inhibitors has also been investigated. The results revealed that the method allowed a sensitive quantitative assay of T4 PNKP and SAP, with detection limits of 0.07 U mL(-1) and 0.003 U mL(-1), respectively. The proposed method is anticipated to find applications in the study of DNA damage repair mechanisms.